RNA Journal Club 2/23/12
DNase I sensitivity QTLs are a major determinant of human expression variation
Jacob F. Degner, Athma A. Pai, Roger Pique-Regi, Jean-Baptiste Veyrieras, Daniel J. Gaffney, Joseph K. Pickrell, Sherryl De Leon, Katelyn Michelini, Noah Lewellen, Gregory E. Crawford, Matthew Stephens, Yoav Gilad & Jonathan K. Pritchard
Nature 482, 390—394, 16 February 2012.
doi:10.1038/nature10808
RNA Journal Club 2/16/12
PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2
Sika Zheng, Erin E Gray, Geetanjali Chawla, Bo Torben Porse, Thomas J O’Dell & Douglas L Black
Nature Neuroscience AOP, 15 January 2012.
doi:10.1038/nn.3026
RNA Journal Club 2/9/12
Sperm-borne microRNA-34c is required for the first cleavage division in mouse
Wei-Min Liu, Ronald T. K. Pang, Philip C. N. Chiu, Benancy P. C. Wong, Kaiqin Lao, Kai-Fai Lee, and William S. B. Yeung
PNAS vol. 109, no. 2, 490–494, 10 January 2012.
doi: 10.1073/pnas.1110368109
RNA Journal Club 2/2/12
Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target
Valentina Libri, Aleksandra Helwak, Pascal Miesen, Diwakar Santhakumar, Jessica G. Borger, Grzegorz Kudla, Finn Grey, David Tollervey, and Amy H. Buck
PNAS vol. 109, no. 1, 279–284, 3 January 2012.
doi: 10.1073/pnas.1114204109
RNA Journal Club 1/26/12
Decapping of Long Noncoding RNAs Regulates Inducible Genes
Sarah Geisler, Lisa Lojek, Ahmad M. Khalil, Kristian E. Baker, and Jeff Coller
Molecular Cell 45, 1–13, 10 February 2012.
DOI 10.1016/j.molcel.2011.11.025
RNA Journal Club 1/19/12
Cap-Assisted Internal Initiation of Translation of Histone H4
Franck Martin, Sharief Barends, Sophie Jaeger, Laure Schaeffer, Lydia Prongidi-Fix, and Gilbert Eriani
Molecular Cell 41, 197–209, 21 January 2011.
DOI 10.1016/j.molcel.2010.12.019
RNA Journal Club 1/12/12
Adaptation to P Element Transposon Invasion in Drosophila melanogaster
Jaspreet S. Khurana, Jie Wang, Jia Xu, Birgit S. Koppetsch, Travis C. Thomson, Anetta Nowosielska, Chengjian Li, Phillip D. Zamore, Zhiping Weng, and William E. Theurkauf
Cell 147, 1551–1563, 23 December 2011.
DOI 10.1016/j.cell.2011.11.042
RNA Journal Club 1/5/12
Selective Ribosome Profiling Reveals the Cotranslational Chaperone Action of Trigger Factor In Vivo
Eugene Oh, Annemarie H. Becker, Arzu Sandikci, Damon Huber, Rachna Chaba, Felix Gloge, Robert J. Nichols, Athanasios Typas, Carol A. Gross, Günter Kramer, Jonathan S. Weissman, and Bernd Bukau
Cell 147, 1295–1308, 9 December 2011.
DOI 10.1016/j.cell.2011.10.044
RNA Journal Club 12/15/11
The In Vivo Kinetics of RNA Polymerase II Elongation during Co-Transcriptional Splicing
Yehuda Brody, Noa Neufeld, Nicole Bieberstein, Sebastien Z. Causse, Eva-Maria Böhnlein, Karla M. Neugebauer, Xavier Darzacq, Yaron Shav-Tal
PLoS Biology | Volume 9 | Issue 1 | e1000573 | January 2011
doi:10.1371/journal.pbio.1000573
RNA Journal Club 12/8/11
Single-Molecule Imaging of Transcriptionally Coupled and Uncoupled Splicing
Diana Y. Vargas, Khyati Shah, Mona Batish, Michael Levandoski, Sourav Sinha, Salvatore A.E. Marras, Paul Schedl, and Sanjay Tyagi
Cell 147, 1054–1065, 23 November 2011.
DOI 10.1016/j.cell.2011.10.024
RNA Journal Club 12/1/11
Filippo M. Cernilogar, Maria Cristina Onorati, Greg O. Kothe, A. Maxwell Burroughs, Krishna Mohan Parsi, Achim Breiling, Federica Lo Sardo, Alka Saxena, Keita Miyoshi, Haruhiko Siomi, Mikiko C. Siomi, Piero Carninci, David S. Gilmour, Davide F. V. Corona & Valerio Orlando
Nature AOP, 6 November 2011.
doi:10.1038/nature10492
RNA Journal Club 11/17/11
Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs
Yvonne Tay, Lev Kats, Leonardo Salmena, Dror Weiss, Shen Mynn Tan, Ugo Ala, Florian Karreth, Laura Poliseno, Paolo Provero, Ferdinando Di Cunto, Judy Lieberman, Isidore Rigoutsos, and Pier Paolo Pandolfi
Cell 147, 344–357, 14 October 2011.
DOI 10.1016/j.cell.2011.09.029
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Pavel Sumazin, Xuerui Yang, Hua-Sheng Chiu, Wei-Jen Chung, Archana Iyer, David Llobet-Navas, Presha Rajbhandari, Mukesh Bansal, Paolo Guarnieri, Jose Silva, and Andrea Califano
Cell 147, 370–381, 14 October 2011.
DOI 10.1016/j.cell.2011.09.041
RNA Journal Club 11/10/11
Nicholas T. Ingolia, Liana F. Lareau, and Jonathan S. Weissman
Cell 147, 1–14, 11 November 2011.
DOI 10.1016/j.cell.2011.10.002
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